Index

A

add_transforms() (medipt.transforms.spatial.composite_transform.CompositeTransform method)

C

change_gamma() (in module medipt.transforms.intensity.change_image_gamma) change_gamma_unnormalized() (in module medipt.transforms.intensity.change_image_gamma) change_image_gamma_np() (in module medipt.transforms.intensity.intensity_utils_np) change_image_gamma_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) clamp_intensity_np() (in module medipt.transforms.intensity.intensity_utils_np)

clamp_intensity_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) ClampIntensity (class in medipt.transforms.intensity.clamp_intensity) composite_transform() (in module medipt.transforms.spatial.composite_transform) CompositeTransform (class in medipt.transforms.spatial.composite_transform) create_composite() (medipt.transforms.spatial.composite_transform.CompositeTransform method) create_inverse_composite() (medipt.transforms.spatial.composite_transform.CompositeTransform method)

E

elastic_deformation_input_image() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) elastic_deformation_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method)

ElasticDeformation (class in medipt.transforms.spatial.elastic_deformation_transform) ElasticDeformationInputImage (class in medipt.transforms.spatial.elastic_deformation_transform) ElasticDeformationOutputImage (class in medipt.transforms.spatial.elastic_deformation_transform)

F

flipping_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method)

FlippingTransform (class in medipt.transforms.spatial.flipping_transform)

G

gaussian_blur_np() (in module medipt.transforms.intensity.intensity_utils_np) gaussian_blur_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) gaussian_noise_np() (in module medipt.transforms.intensity.intensity_utils_np) gaussian_noise_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) GaussianBlur (class in medipt.transforms.intensity.gaussian_blur) GaussianNoise (class in medipt.transforms.intensity.gaussian_noise) get_displacement_field() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformation method) (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_image_params() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_images() (medipt.resample_image.resample_image.ResampleImage method) get_input_center() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_input_origin() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_input_output_space() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_inverse_transform() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformation method) (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_inverted_displacement_field() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformation method) (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_inverted_transform_from_displacement() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformation method) (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_output_center() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_output_origin() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_output_size_from_spacing() (in module medipt.utils.spatial_utils) get_output_spacing_from_size() (in module medipt.utils.spatial_utils) get_random_point() (medipt.transforms.spatial.spatial_transform.SpatialTransform method) get_random_spline_params() (medipt.transforms.spatial.elastic_deformation_transform.RandomElasticDeformation method)

get_random_transform() (medipt.transforms.spatial.elastic_deformation_transform.RandomElasticDeformation method) (medipt.transforms.spatial.flipping_transform.RandomFlipping method) (medipt.transforms.spatial.rotation_transform.RandomRotation method) (medipt.transforms.spatial.scaling_transform.RandomScaling method) (medipt.transforms.spatial.scaling_transform.RandomUniformScaling method) (medipt.transforms.spatial.translation_transform.RandomBBoxTranslation method) (medipt.transforms.spatial.translation_transform.RandomCoordTranslation method) (medipt.transforms.spatial.translation_transform.RandomTranslation method) get_random_transform_on_input() (medipt.transforms.spatial.elastic_deformation_transform.RandomElasticDeformationTransformInputImage method) get_random_transform_on_output() (medipt.transforms.spatial.elastic_deformation_transform.RandomElasticDeformationTransformOutputImage method) get_resampled_images() (medipt.resample_image.resample_image.ResampleImage method) get_scale_transform() (medipt.transforms.spatial.scaling_transform.ScalingTransform method) get_simpleitk_pix_type() (in module medipt.resample_image.resample_image) get_sitk_interpolator() (in module medipt.resample_image.resample_image) get_transform() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformation method) (medipt.transforms.spatial.flipping_transform.FlippingTransform method) (medipt.transforms.spatial.rotation_transform.RotationTransform method) (medipt.transforms.spatial.scaling_transform.ScalingTransform method) (medipt.transforms.spatial.translation_transform.RandomFactorInput method) (medipt.transforms.spatial.translation_transform.TranslateInputCenterToInputOrigin method) (medipt.transforms.spatial.translation_transform.TranslateInputCenterToOutputCenter method) (medipt.transforms.spatial.translation_transform.TranslateInputOriginToOutputCenter method) (medipt.transforms.spatial.translation_transform.TranslateRandomInputCenterToInputOrigin method) (medipt.transforms.spatial.translation_transform.TranslationTransform method) get_transform_on_input() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformationInputImage method) get_transform_on_output() (medipt.transforms.spatial.elastic_deformation_transform.ElasticDeformationOutputImage method)

I

image_center() (in module medipt.utils.spatial_utils)

image_index_to_phys() (in module medipt.utils.spatial_utils) initialize_rand_state() (in module medipt.utils.random_float)

M

medipt module medipt.crop_image module medipt.crop_image.threshold_crop_background module medipt.resample_image module medipt.resample_image.resample_image module medipt.transforms module medipt.transforms.intensity module medipt.transforms.intensity.change_image_gamma module medipt.transforms.intensity.clamp_intensity module medipt.transforms.intensity.gaussian_blur module medipt.transforms.intensity.gaussian_noise module medipt.transforms.intensity.intensity_utils_np module medipt.transforms.intensity.intensity_utils_sitk module medipt.transforms.intensity.rescale_intensity module medipt.transforms.intensity.shift_scale_intensity module medipt.transforms.spatial module medipt.transforms.spatial.composite_transform module medipt.transforms.spatial.elastic_deformation_transform module medipt.transforms.spatial.flipping_transform module medipt.transforms.spatial.random_affine_transform module medipt.transforms.spatial.rotation_transform module medipt.transforms.spatial.scaling_transform module medipt.transforms.spatial.spatial_transform module

medipt.transforms.spatial.spatial_transform_init module medipt.transforms.spatial.translation_transform module medipt.transforms.transform_coordinate module medipt.utils module medipt.utils.image_input_output_space module medipt.utils.random_float module medipt.utils.spatial_utils module min_max_intensity_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) module medipt medipt.crop_image medipt.crop_image.threshold_crop_background medipt.resample_image medipt.resample_image.resample_image medipt.transforms medipt.transforms.intensity medipt.transforms.intensity.change_image_gamma medipt.transforms.intensity.clamp_intensity medipt.transforms.intensity.gaussian_blur medipt.transforms.intensity.gaussian_noise medipt.transforms.intensity.intensity_utils_np medipt.transforms.intensity.intensity_utils_sitk medipt.transforms.intensity.rescale_intensity medipt.transforms.intensity.shift_scale_intensity medipt.transforms.spatial medipt.transforms.spatial.composite_transform medipt.transforms.spatial.elastic_deformation_transform medipt.transforms.spatial.flipping_transform medipt.transforms.spatial.random_affine_transform medipt.transforms.spatial.rotation_transform medipt.transforms.spatial.scaling_transform medipt.transforms.spatial.spatial_transform medipt.transforms.spatial.spatial_transform_init medipt.transforms.spatial.translation_transform medipt.transforms.transform_coordinate medipt.utils medipt.utils.image_input_output_space medipt.utils.random_float medipt.utils.spatial_utils

P

physical_image_size() (in module medipt.utils.spatial_utils)

physical_image_size_no_origin() (in module medipt.utils.spatial_utils)

R

random_bbox_translation() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_binomial() (in module medipt.utils.random_float) random_change_gamma() (in module medipt.transforms.intensity.change_image_gamma) random_coord_translation() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_elastic_deformation_input_image() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_elastic_deformation_output_image() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_elastic_deformation_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_flipping_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_rotation_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_scaling_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_translation_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) random_uniform_float() (in module medipt.utils.random_float) random_uniform_scaling_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) RandomAffineTransform (class in medipt.transforms.spatial.random_affine_transform) RandomBBoxTranslation (class in medipt.transforms.spatial.translation_transform) RandomCoordTranslation (class in medipt.transforms.spatial.translation_transform) RandomElasticDeformation (class in medipt.transforms.spatial.elastic_deformation_transform) RandomElasticDeformationTransformInputImage (class in medipt.transforms.spatial.elastic_deformation_transform)

RandomElasticDeformationTransformOutputImage (class in medipt.transforms.spatial.elastic_deformation_transform) RandomFactorInput (class in medipt.transforms.spatial.translation_transform) RandomFlipping (class in medipt.transforms.spatial.flipping_transform) RandomGaussianBlur (class in medipt.transforms.intensity.gaussian_blur) RandomGaussianNoise (class in medipt.transforms.intensity.gaussian_noise) RandomRotation (class in medipt.transforms.spatial.rotation_transform) RandomScaling (class in medipt.transforms.spatial.scaling_transform) RandomTranslation (class in medipt.transforms.spatial.translation_transform) RandomUniformScaling (class in medipt.transforms.spatial.scaling_transform) resample_image() (medipt.resample_image.resample_image.ResampleImage method) ResampleImage (class in medipt.resample_image.resample_image) rescale_intensity_np() (in module medipt.transforms.intensity.intensity_utils_np) rescale_intensity_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) rescale_intensity_window_np() (in module medipt.transforms.intensity.intensity_utils_np) rescale_intensity_window_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) RescaleIntensity (class in medipt.transforms.intensity.rescale_intensity) resolve_input_output_space() (in module medipt.utils.image_input_output_space) rotation_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) RotationTransform (class in medipt.transforms.spatial.rotation_transform)

S

scale() (in module medipt.transforms.intensity.change_image_gamma) scaling_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) ScalingTransform (class in medipt.transforms.spatial.scaling_transform) set_num_workers() (in module medipt.utils)

shift_scale_intensity_np() (in module medipt.transforms.intensity.intensity_utils_np) shift_scale_intensity_sitk() (in module medipt.transforms.intensity.intensity_utils_sitk) ShiftScaleIntensity (class in medipt.transforms.intensity.shift_scale_intensity) SpatialTransform (class in medipt.transforms.spatial.spatial_transform) SpatialTransformInit (class in medipt.transforms.spatial.spatial_transform_init)

T

threshold_crop_background() (in module medipt.crop_image.threshold_crop_background) transform_coordinate() (medipt.transforms.transform_coordinate.TransformCoordinate method) TransformCoordinate (class in medipt.transforms.transform_coordinate) translate_input_center_to_input_origin() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) translate_input_center_to_output_center() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) translate_input_origin_to_output_center() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method)

translate_random_input_center_to_input_origin() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) TranslateInputCenterToInputOrigin (class in medipt.transforms.spatial.translation_transform) TranslateInputCenterToOutputCenter (class in medipt.transforms.spatial.translation_transform) TranslateInputOriginToOutputCenter (class in medipt.transforms.spatial.translation_transform) TranslateRandomInputCenterToInputOrigin (class in medipt.transforms.spatial.translation_transform) translation_transform() (medipt.transforms.spatial.spatial_transform_init.SpatialTransformInit method) TranslationTransform (class in medipt.transforms.spatial.translation_transform)